Domain ID e2y4aB2

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  • A: alpha complex topology
  • X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins
  • H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins
  • T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins
  • F: Peptidase_S13
UID: 000425265
Type: Automatic domain
Parent: e2ex2A2
Range: B:45-66,B:285-353
Ligands: BH6
PDB: 2y4a
PDB Description: D-ALANYL-D-ALANINE CARBOXYPEPTIDASE
UniProt: P39045
Species: Actinomadura sp. R39

Structure of domain e2y4aB2

Domains in the same chain:

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e2y4aB3 B:1-44,B:354-466 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2y4aB2 B:45-66,B:285-353 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2y4aB4 B:67-163,B:239-284 DTD-like Inserted a+b domain in Dac-like proteins Inserted a+b domain in Dac-like proteins
e2y4aB1 B:164-238 Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins

Domains in the same PDB:

e2y4aA3 A:1-44,A:354-466 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2y4aA2 A:45-66,A:285-353 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2y4aA4 A:67-163,A:239-284 DTD-like Inserted a+b domain in Dac-like proteins Inserted a+b domain in Dac-like proteins
e2y4aA1 A:164-238 Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins
e2y4aB3 B:1-44,B:354-466 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2y4aB2 B:45-66,B:285-353 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2y4aB4 B:67-163,B:239-284 DTD-like Inserted a+b domain in Dac-like proteins Inserted a+b domain in Dac-like proteins
e2y4aB1 B:164-238 Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins
e2y4aC3 C:1-44,C:354-466 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2y4aC2 C:45-66,C:285-353 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2y4aC4 C:67-163,C:239-284 DTD-like Inserted a+b domain in Dac-like proteins Inserted a+b domain in Dac-like proteins
e2y4aC1 C:164-238 Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins
e2y4aD3 D:1-44,D:354-466 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2y4aD2 D:45-66,D:285-353 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2y4aD4 D:67-163,D:239-284 DTD-like Inserted a+b domain in Dac-like proteins Inserted a+b domain in Dac-like proteins
e2y4aD1 D:164-238 Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins

Structural contacts of domain e2y4aB2 of H-group "alpha-helical domain in beta-lactamase/transpeptidase-like proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2y4aA4 B:x,y,z->A:X,Y,Z Inserted a+b domain in Dac-like proteins Interaction Interface Pymol