ECOD: domain e2ybbb1

Domain ID e2ybbb1

A: a+b two layers
X: LuxS, MPP, ThrRS/AlaRS common domain
H: LuxS, MPP, ThrRS/AlaRS common domain
T: LuxS/MPP-like metallohydrolase
F: Peptidase_M16

UID:	000431912
Type:	Automatic domain
Parent:	e1ppjB1
Range:	b:12-235
PDB:	2ybb
PDB Description:	CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL
UniProt:	P23004
Hsap BLAST neighbor:	P22695
Species:	Bos taurus

Domains in the same chain:

Download Pymol

e2ybbb1	b:12-235	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e2ybbb2	b:236-439	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase

Domains in the same PDB:

Structural contacts of domain e2ybbb1 of H-group "LuxS, MPP, ThrRS/AlaRS common domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ybba2	b:X,Y,Z->a:x,y,z	LuxS, MPP, ThrRS/AlaRS common domain	Interaction Interface Pymol
e2ybba1	b:X,Y,Z->a:x,y,z	LuxS, MPP, ThrRS/AlaRS common domain	Interaction Interface Pymol
e2ybbi1	b:x,y,z->i:X,Y,Z	Ubiquinol-cytochrome c reductase 8 kDa protein	Interaction Interface Pymol
e2ybbB2	b:X,Y,Z->B:x,y,z	LuxS, MPP, ThrRS/AlaRS common domain	Interaction Interface Pymol
e2ybbF1	b:x,y,z->F:X,Y,Z	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Interaction Interface Pymol

e2ybb13	1:2-249	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like
e2ybb12	1:250-333	beta-Grasp	Ubiquitin-related	Nqo1 middle domain-like
e2ybb11	1:334-438	Bromodomain-like	Nqo1C-terminal domain-like	Nqo1C-terminal domain-like
e2ybb22	2:2-74	NQO2 helical bundle domain	NQO2 helical bundle domain	NQO2 helical bundle domain
e2ybb21	2:75-180	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like
e2ybb34	3:1-95	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2ybb39	3:96-161	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin
e2ybb37	3:162-246	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2ybb310	3:247-304	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1
e2ybb36	3:305-379,3:542-685	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2ybb35	3:375-541	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2ybb38	3:686-777	cradle loop barrel	RIFT-related	double psi
e2ybb42	4:25-63,4:378-409	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2ybb43	4:64-106,4:305-377	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2ybb41	4:107-304	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e2ybb51	5:1-196	Nqo5-like	Nqo5-like	Nqo5-like
e2ybb61	6:15-175	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e2ybb71	7:3-129	Type III secretory system chaperone-like	Frataxin-like	Frataxin-like
e2ybb81	8:26-179	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2ybba1	a:1-233	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e2ybba2	a:234-443	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e2ybbA1	A:1-233	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e2ybbA2	A:234-443	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e2ybbb1	b:12-235	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e2ybbb2	b:236-439	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e2ybbB1	B:17-235	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e2ybbB2	B:236-439	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e2ybbc2	c:10-260	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Transmembrane di-heme cytochromes
e2ybbc1	c:261-379	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ybbC1	C:15-260	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Transmembrane di-heme cytochromes
e2ybbC2	C:261-379	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ybbd1	d:1-195	Cytochrome c-like	Cytochrome c	Cytochrome c
e2ybbd2	d:196-241	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor
e2ybbD1	D:1-195	Cytochrome c-like	Cytochrome c	Cytochrome c
e2ybbD2	D:196-241	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor
e2ybbe2	e:1-69	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor
e2ybbe3	e:70-196	ISP domain	ISP domain	ISP domain
e2ybbE2	E:1-69	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor
e2ybbE3	E:70-196	ISP domain	ISP domain	ISP domain
e2ybbf1	f:12-110	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ybbF1	F:12-110	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ybbg1	g:1-76	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ybbG1	G:1-75	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ybbh1	h:13-78	cytochrome bc1 complex 11 kDa protein-like	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ybbH1	H:13-78	cytochrome bc1 complex 11 kDa protein-like	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ybbi1	i:32-78	Ubiquinol-cytochrome c reductase 8 kDa protein	Ubiquinol-cytochrome c reductase 8 kDa protein	Ubiquinol-cytochrome c reductase 8 kDa protein
e2ybbI1	I:32-78	Ubiquinol-cytochrome c reductase 8 kDa protein	Ubiquinol-cytochrome c reductase 8 kDa protein	Ubiquinol-cytochrome c reductase 8 kDa protein
e2ybbj1	j:1-62	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ybbJ1	J:1-62	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ybbk1	k:15-36	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ybbK1	K:15-36	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e2ybbL1	L:1-514	Cytochrome c oxidase subunit I-like	Cytochrome c oxidase subunit I-like	Cytochrome c oxidase subunit I-like
e2ybbM1	M:1-90	Cytochrome c oxidase subunit II-like, transmembrane region	Cytochrome c oxidase subunit II-like, transmembrane region	Cytochrome c oxidase subunit II-like, transmembrane region
e2ybbM2	M:91-227	Cupredoxin-like	Cupredoxin-related	Cupredoxin-related
e2ybbN1	N:1-261	Cytochrome c oxidase subunit III-like	Cytochrome c oxidase subunit III-like	Cytochrome c oxidase subunit III-like
e2ybbO1	O:4-147	Mitochondrial cytochrome c oxidase subunit IV	Mitochondrial cytochrome c oxidase subunit IV	Mitochondrial cytochrome c oxidase subunit IV
e2ybbP1	P:1-109	Repetitive alpha hairpins	Cytochrome c oxidase subunit E	Cytochrome c oxidase subunit E
e2ybbQ1	Q:1-98	Rubredoxin-like	Rubredoxin-related	Cytochrome c oxidase Subunit F
e2ybbR1	R:1-84	Mitochondrial cytochrome c oxidase subunit VIa	Mitochondrial cytochrome c oxidase subunit VIa	Mitochondrial cytochrome c oxidase subunit VIa
e2ybbS1	S:11-85	Cytochrome c oxidase subunit h	Cytochrome c oxidase subunit h	Cytochrome c oxidase subunit h
e2ybbT1	T:1-73	Mitochondrial cytochrome c oxidase subunit VIc	Mitochondrial cytochrome c oxidase subunit VIc	Mitochondrial cytochrome c oxidase subunit VIc
e2ybbU1	U:1-57	Mitochondrial cytochrome c oxidase subunit VIIa	Mitochondrial cytochrome c oxidase subunit VIIa	Mitochondrial cytochrome c oxidase subunit VIIa
e2ybbV1	V:6-54	Mitochondrial cytochrome c oxidase subunit VIIb	Mitochondrial cytochrome c oxidase subunit VIIb	Mitochondrial cytochrome c oxidase subunit VIIb
e2ybbW1	W:1-47	Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)	Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)	Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
e2ybbX1	X:1-43	Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)	Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)	Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
e2ybbY1	Y:1-104	Cytochrome c-like	Cytochrome c	Cytochrome c