ECOD: domain e2ycbB2

Domain ID e2ycbB2

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: Beta-Casp

UID:	001814503
Type:	Automatic domain
Parent:	e2i7tA3
Range:	B:141-179,B:387-577
PDB:	2ycb
PDB Description:	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR
UniProt:	O27271
Hsap BLAST neighbor:	Q9UKF6
Species:

Domain
In chain context
In PDB context

Structure of domain e2ycbB2

Domains in the same chain:

Download Pymol

e2ycbB3	B:2-69	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e2ycbB4	B:70-140	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e2ycbB2	B:141-179,B:387-577	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2ycbB1	B:180-386,B:578-636	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase

Domains in the same PDB:

e2ycbA1	A:3-69	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e2ycbA2	A:70-140	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e2ycbA3	A:141-179,A:387-577	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2ycbA4	A:180-386,A:578-636	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase
e2ycbB3	B:2-69	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e2ycbB4	B:70-140	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e2ycbB2	B:141-179,B:387-577	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2ycbB1	B:180-386,B:578-636	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase

Structural contacts of domain e2ycbB2 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ycbA4	B:x,y,z->A:X,Y,Z	Metallo-hydrolase/oxidoreductase	Interaction Interface Pymol
e2ycbA3	B:-Y+1/2,X-1/2,Z+1/4->A:x,y,z	P-loop domains-related	Interaction Interface Pymol
e2ycbA2	B:-Y+1/2,X-1/2,Z+1/4->A:x,y,z	KH-domains	Interaction Interface Pymol
e2ycbA3	B:X-1/2,-Y-1/2,-Z-1/4->A:x,y,z	P-loop domains-related	Interaction Interface Pymol