ECOD: domain e2yhaA4

Domain ID e2yhaA4

A: a/b three-layered sandwiches
X: Middle domain in Argonaute homologs
H: Middle domain in Argonaute homologs
T: Middle domain in Argonaute homologs
F: Piwi

UID:	001188318
Type:	Automatic domain
Parent:	e1w9hA1
Range:	A:506-649
Ligands:	GOL SO4
PDB:	2yha
PDB Description:	POST-TRANSCRIPTIONAL GENE SILENCING PROTEIN QDE-2
UniProt:	Q9P8T1
Species:	Neurospora crassa

Domains in the same chain:

Download Pymol

e2yhaA4	A:506-649	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs
e2yhaA3	A:650-938	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Domains in the same PDB:

e2yhaA4	A:506-649	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs	Middle domain in Argonaute homologs
e2yhaA3	A:650-938	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Structural contacts of domain e2yhaA4 of H-group "Middle domain in Argonaute homologs":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2yhaA3	A:x,y,z->A:-X-1,-X+Y-1,-Z-1/3	Ribonuclease H-like	Interaction Interface Pymol
e2yhaA4	A:x,y,z->A:-X-1,-X+Y-1,-Z-1/3	Middle domain in Argonaute homologs	Interaction Interface Pymol
e2yhaA4	A:-X-1,-X+Y-1,-Z-1/3->A:x,y,z	Middle domain in Argonaute homologs	Interaction Interface Pymol
e2yhaA3	A:x,y,z->A:Y-1,X,-Z	Ribonuclease H-like	Interaction Interface Pymol
e2yhaA4	A:x,y,z->A:-X,-X+Y,-Z-1/3	Middle domain in Argonaute homologs	Interaction Interface Pymol
e2yhaA4	A:-X,-X+Y,-Z-1/3->A:x,y,z	Middle domain in Argonaute homologs	Interaction Interface Pymol
e2yhaA3	A:x,y,z->A:X-1,Y-1,Z	Ribonuclease H-like	Interaction Interface Pymol