Domain ID e2yi8D1

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  • A: alpha complex topology
  • X: Sigma2 domain-like
  • H: C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
  • T: C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
  • F: Birna_RdRp_C
UID: 001580997
Type: Automatic domain
Parent: e2pggA2
Range: D:696-792
PDB: 2yi8
PDB Description: RNA-DIRECTED RNA POLYMERASE
UniProt: P22173
Species: Infectious pancreatic necrosis virus

Structure of domain e2yi8D1

Domains in the same chain:

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e2yi8D3 D:11-19,D:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yi8D2 D:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yi8D1 D:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase

Domains in the same PDB:

e2yi8A1 A:11-19,A:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yi8A2 A:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yi8A3 A:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yi8B1 B:11-19,B:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yi8B2 B:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yi8B3 B:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yi8C2 C:11-19,C:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yi8C1 C:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yi8C3 C:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yi8D3 D:11-19,D:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yi8D2 D:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yi8D1 D:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yi8E3 E:11-19,E:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yi8E1 E:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yi8E2 E:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase

Structural contacts of domain e2yi8D1 of H-group "C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2yi8E3 D:x,y,z->E:-X+1,Y-1/2,-Z-1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol