Domain ID e2yi9D2

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: 'palm' domain in birnaviruse RNA-dependent RNA polymerase
  • F: Birna_RdRp_palm
UID: 001578953
Type: Automatic domain
Parent: e2pggA3
Range: D:11-19,D:29-522
Ligands: CL K MG
PDB: 2yi9
PDB Description: RNA-DIRECTED RNA POLYMERASE
UniProt: P22173
Species: Infectious pancreatic necrosis virus

Structure of domain e2yi9D2

Domains in the same chain:

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e2yi9D2 D:11-19,D:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yi9D3 D:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yi9D1 D:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase

Domains in the same PDB:

e2yi9A3 A:11-19,A:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yi9A1 A:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yi9A2 A:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yi9B3 B:11-19,B:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yi9B2 B:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yi9B1 B:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yi9C3 C:11-19,C:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yi9C1 C:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yi9C2 C:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yi9D2 D:11-19,D:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yi9D3 D:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yi9D1 D:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yi9E3 E:11-19,E:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yi9E1 E:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yi9E2 E:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase

Structural contacts of domain e2yi9D2 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2yi9C3 D:X-1,Y,Z->C:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2yi9C1 D:X-1,Y,Z->C:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e2yi9B3 D:x,y,z->B:X,Y,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2yi9A2 D:X-1/2,-Y-1/2,-Z->A:x,y,z C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase Interaction Interface Pymol
e2yi9E1 D:X,Y,Z->E:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e2yi9C2 D:x,y,z->C:-X,Y-1/2,-Z-1/2 C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase Interaction Interface Pymol
e2yi9C3 D:x,y,z->C:-X,Y-1/2,-Z-1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol