Domain ID e2yiaH2

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: 'palm' domain in birnaviruse RNA-dependent RNA polymerase
  • F: Birna_RdRp_palm
UID: 001277493
Type: Automatic domain
Parent: e2pggA3
Range: H:3-522
Ligands: K
PDB: 2yia
PDB Description: RNA-DIRECTED RNA POLYMERASE
UniProt: P22173
Species: Infectious pancreatic necrosis virus

Structure of domain e2yiaH2

Domains in the same chain:

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e2yiaH2 H:3-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yiaH3 H:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yiaH1 H:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase

Domains in the same PDB:

e2yiaA2 A:3-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yiaA3 A:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yiaA1 A:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yiaB2 B:3-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yiaB3 B:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yiaB1 B:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yiaC2 C:3-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yiaC3 C:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yiaC1 C:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yiaD2 D:3-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yiaD3 D:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yiaD1 D:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yiaE2 E:3-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yiaE4 E:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yiaE3 E:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yiaF2 F:11-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yiaF1 F:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yiaF3 F:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yiaG3 G:31-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yiaG2 G:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yiaG1 G:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yiaH2 H:3-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yiaH3 H:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yiaH1 H:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase

Structural contacts of domain e2yiaH2 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2yiaA2 H:X,Y-1,Z->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2yiaA3 H:X,Y-1,Z->A:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol