Domain ID e2yibD1

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: 'palm' domain in birnaviruse RNA-dependent RNA polymerase
  • F: Birna_RdRp_palm
UID: 001145898
Type: Manual and representative domain
Range: D:3-522
PDB: 2yib
PDB Description: RNA-DIRECTED RNA POLYMERASE
UniProt: P22173
Species: Infectious pancreatic necrosis virus

Structure of domain e2yibD1

Domains in the same chain:

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e2yibD1 D:3-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yibD2 D:523-687 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases

Domains in the same PDB:

e2yibA1 A:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yibA2 A:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yibA3 A:696-798 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yibB2 B:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yibB3 B:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yibB1 B:696-798 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yibC3 C:29-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yibC1 C:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yibC2 C:696-798 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e2yibD1 D:3-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2yibD2 D:523-687 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases

Structural contacts of domain e2yibD1 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2yibA1 D:-X-1/2,-Y,Z-1/2->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2yibA2 D:-X-1/2,-Y,Z-1/2->A:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e2yibB3 D:x,y,z->B:X,Y,Z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e2yibB1 D:-X-1,Y-1/2,-Z+1/2->B:x,y,z C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase Interaction Interface Pymol
e2yibB2 D:-X-1,Y-1/2,-Z+1/2->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2yibC2 D:x,y,z->C:X-1,Y,Z C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase Interaction Interface Pymol
e2yibA2 D:x,y,z->A:X,Y,Z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol