Domain ID e2yidB2

Download files:
  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: Transket_pyr
UID: 000422503
Type: Automatic domain
Parent: e2r8oA2
Range: B:820-1090
Ligands: CA TD7
PDB: 2yid
PDB Description: 2-OXOGLUTARATE DECARBOXYLASE
UniProt: A0R2B1
Hsap BLAST neighbor: Q96HY7
Species: Mycobacterium smegmatis

Structure of domain e2yidB2

Domains in the same chain:

e2yidB1 B:365-819 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yidB2 B:820-1090 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yidB3 B:1091-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like

Domains in the same PDB:

e2yidA1 A:361-827 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yidA2 A:831-1090 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yidA3 A:1091-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2yidB1 B:365-819 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yidB2 B:820-1090 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yidB3 B:1091-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2yidC1 C:364-819 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yidC2 C:820-1090 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yidC3 C:1091-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2yidD1 D:361-828 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yidD2 D:831-1090 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2yidD3 D:1091-1227 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like

Structural contacts of domain e2yidB2 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2yidA2 B:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2yidA1 B:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2yidA3 B:x,y,z->A:X,Y,Z TK C-terminal domain-like Interaction Interface Pymol
e2yidC3 B:X,Y,Z-1->C:x,y,z TK C-terminal domain-like Interaction Interface Pymol