Domain ID e2yknB1

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RVT_thumb
UID: 000427372
Type: Automatic domain
Parent: e2zd1B1
Range: B:238-311
PDB: 2ykn
PDB Description: REVERSE TRANSCRIPTASE/RIBONUCLEASE H
UniProt: P03366
Species:

Structure of domain e2yknB1

Domains in the same chain:

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e2yknB2 B:1-237 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2yknB1 B:238-311 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yknB3 B:312-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Domains in the same PDB:

e2yknA12 A:1-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2yknA11 A:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yknA9 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e2yknA10 A:429-558 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2yknB2 B:1-237 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2yknB1 B:238-311 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2yknB3 B:312-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e2yknB1 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2yknA10 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e2yknA12 B:x,y,z->A:-X+1/2,Y-1/2,-Z+1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2yknA10 B:x,y,z->A:-X+1,Y,-Z+1/2 Ribonuclease H-like Interaction Interface Pymol
e2yknB1 B:x,y,z->B:X,-Y,-Z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e2yknB1 B:X,-Y,-Z->B:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol