Domain ID e2yksJ1

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  • A: beta sandwiches
  • X: Immunoglobulin-like beta-sandwich
  • H: Nicotinic receptor ligand binding domain-like
  • T: Nicotinic receptor ligand binding domain-like
  • F: Neur_chan_LBD
UID: 000423910
Type: Automatic domain
Parent: e1uw6A1
Range: J:11-201
PDB: 2yks
PDB Description: CYS-LOOP LIGAND-GATED ION CHANNEL
UniProt: P0C7B7
Hsap BLAST neighbor: O75311
Species: Dickeya chrysanthemi

Structure of domain e2yksJ1

Domains in the same chain:

e2yksJ1 J:11-201 Immunoglobulin-like beta-sandwich Nicotinic receptor ligand binding domain-like Nicotinic receptor ligand binding domain-like
e2yksJ2 J:200-316 Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore

Domains in the same PDB:

e2yksA1 A:2-201 Immunoglobulin-like beta-sandwich Nicotinic receptor ligand binding domain-like Nicotinic receptor ligand binding domain-like
e2yksA2 A:200-316 Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore
e2yksB1 B:11-201 Immunoglobulin-like beta-sandwich Nicotinic receptor ligand binding domain-like Nicotinic receptor ligand binding domain-like
e2yksB2 B:200-316 Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore
e2yksC1 C:11-201 Immunoglobulin-like beta-sandwich Nicotinic receptor ligand binding domain-like Nicotinic receptor ligand binding domain-like
e2yksC2 C:200-316 Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore
e2yksD1 D:11-201 Immunoglobulin-like beta-sandwich Nicotinic receptor ligand binding domain-like Nicotinic receptor ligand binding domain-like
e2yksD2 D:200-316 Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore
e2yksE1 E:11-201 Immunoglobulin-like beta-sandwich Nicotinic receptor ligand binding domain-like Nicotinic receptor ligand binding domain-like
e2yksE2 E:200-316 Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore
e2yksF1 F:11-201 Immunoglobulin-like beta-sandwich Nicotinic receptor ligand binding domain-like Nicotinic receptor ligand binding domain-like
e2yksF2 F:200-316 Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore
e2yksG1 G:11-201 Immunoglobulin-like beta-sandwich Nicotinic receptor ligand binding domain-like Nicotinic receptor ligand binding domain-like
e2yksG2 G:200-316 Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore
e2yksH1 H:11-201 Immunoglobulin-like beta-sandwich Nicotinic receptor ligand binding domain-like Nicotinic receptor ligand binding domain-like
e2yksH2 H:200-316 Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore
e2yksI1 I:11-201 Immunoglobulin-like beta-sandwich Nicotinic receptor ligand binding domain-like Nicotinic receptor ligand binding domain-like
e2yksI2 I:200-316 Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore
e2yksJ1 J:11-201 Immunoglobulin-like beta-sandwich Nicotinic receptor ligand binding domain-like Nicotinic receptor ligand binding domain-like
e2yksJ2 J:200-316 Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore

Structural contacts of domain e2yksJ1 of H-group "Nicotinic receptor ligand binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2yksF1 J:x,y,z->F:X,Y,Z Nicotinic receptor ligand binding domain-like Interaction Interface Pymol
e2yksF2 J:x,y,z->F:X,Y,Z Neurotransmitter-gated ion-channel transmembrane pore Interaction Interface Pymol
e2yksI1 J:x,y,z->I:X,Y,Z Nicotinic receptor ligand binding domain-like Interaction Interface Pymol
e2yksG2 J:x,y,z->G:X-1,Y,Z Neurotransmitter-gated ion-channel transmembrane pore Interaction Interface Pymol