ECOD: domain e2ymbD1

Domain ID e2ymbD1

A: a+b three layers
X: Phospholipase D/nuclease
H: Phospholipase D/nuclease
T: Phospholipase D/nuclease
F: MIT_C

UID:	001031452
Type:	Automatic domain
Parent:	e4a5zB1
Range:	D:89-244
PDB:	2ymb
PDB Description:	MIT DOMAIN-CONTAINING PROTEIN 1
UniProt:	Q8WV92
Hsap BLAST neighbor:	Q8WV92
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e2ymbD2	D:10-88	Spectrin repeat-like	MIT domain	MIT domain
e2ymbD1	D:89-244	Phospholipase D/nuclease	Phospholipase D/nuclease	Phospholipase D/nuclease

Domains in the same PDB:

Structural contacts of domain e2ymbD1 of H-group "Phospholipase D/nuclease":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ymbB1	D:x,y,z->B:X,Y,Z	Phospholipase D/nuclease	Interaction Interface Pymol
e2ymbD1	D:x,y,z->D:-X,Y,-Z-1	Phospholipase D/nuclease	Interaction Interface Pymol
e2ymbD1	D:-X,Y,-Z-1->D:x,y,z	Phospholipase D/nuclease	Interaction Interface Pymol
e2ymbC2	D:x,y,z->C:-Z-1/2,X+1/2,-Y-1/2	MIT domain	Interaction Interface Pymol
e2ymbC1	D:x,y,z->C:X,Y,Z	Phospholipase D/nuclease	Interaction Interface Pymol
e2ymbC1	D:x,y,z->C:-X,Y,-Z-1	Phospholipase D/nuclease	Interaction Interface Pymol

e2ymbA1	A:89-243	Phospholipase D/nuclease	Phospholipase D/nuclease	Phospholipase D/nuclease
e2ymbB1	B:89-243	Phospholipase D/nuclease	Phospholipase D/nuclease	Phospholipase D/nuclease
e2ymbC2	C:10-88	Spectrin repeat-like	MIT domain	MIT domain
e2ymbC1	C:89-244	Phospholipase D/nuclease	Phospholipase D/nuclease	Phospholipase D/nuclease
e2ymbD2	D:10-88	Spectrin repeat-like	MIT domain	MIT domain
e2ymbD1	D:89-244	Phospholipase D/nuclease	Phospholipase D/nuclease	Phospholipase D/nuclease