ECOD: domain e2yvkC2

Domain ID e2yvkC2

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: NagB/RpiA/CoA transferase-like
F: IF-2B

UID:	001189900
Type:	Automatic domain
Parent:	e1t5oA1
Range:	C:138-349
Ligands:	MRU
PDB:	2yvk
PDB Description:	METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE
UniProt:	O31662
Hsap BLAST neighbor:	Q9BV20
Species:	Bacillus subtilis

Domains in the same chain:

Download Pymol

e2yvkC3	C:1-137	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Translation initiation factor eIF-2B delta subunit N-terminal helical domain
e2yvkC2	C:138-349	Rossmann-like	Rossmann-related	NagB/RpiA/CoA transferase-like

Domains in the same PDB:

e2yvkA3	A:1-137	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Translation initiation factor eIF-2B delta subunit N-terminal helical domain
e2yvkA2	A:138-349	Rossmann-like	Rossmann-related	NagB/RpiA/CoA transferase-like
e2yvkB3	B:1-137	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Translation initiation factor eIF-2B delta subunit N-terminal helical domain
e2yvkB2	B:138-349	Rossmann-like	Rossmann-related	NagB/RpiA/CoA transferase-like
e2yvkC3	C:1-137	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Translation initiation factor eIF-2B delta subunit N-terminal helical domain
e2yvkC2	C:138-349	Rossmann-like	Rossmann-related	NagB/RpiA/CoA transferase-like
e2yvkD3	D:1-137	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Translation initiation factor eIF-2B delta subunit N-terminal helical domain
e2yvkD2	D:138-349	Rossmann-like	Rossmann-related	NagB/RpiA/CoA transferase-like

Structural contacts of domain e2yvkC2 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2yvkD3	C:X,Y,Z->D:x,y,z	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Interaction Interface Pymol
e2yvkD2	C:X,Y,Z->D:x,y,z	Rossmann-related	Interaction Interface Pymol
e2yvkD3	C:x,y,z->D:X-1,Y,Z	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Interaction Interface Pymol
e2yvkC2	C:x,y,z->C:-X,Y-1/2,-Z+1	Rossmann-related	Interaction Interface Pymol
e2yvkC2	C:-X,Y-1/2,-Z+1->C:x,y,z	Rossmann-related	Interaction Interface Pymol
e2yvkA3	C:x,y,z->A:-X+1,Y-1/2,-Z	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Interaction Interface Pymol
e2yvkB3	C:X,Y,Z-1->B:x,y,z	Translation initiation factor eIF-2B delta subunit N-terminal helical domain	Interaction Interface Pymol
e2yvkD2	C:-X,Y-1/2,-Z+1->D:x,y,z	Rossmann-related	Interaction Interface Pymol