ECOD: domain e2z0lB2

Domain ID e2z0lB2

A: a+b two layers
X: DNA clamp
H: DNA clamp
T: DNA clamp
F: Herpes_DNAp_acc

UID:	001106099
Type:	Automatic domain
Parent:	e2z0lA2
Range:	B:154-299
PDB:	2z0l
PDB Description:	EARLY ANTIGEN PROTEIN D
UniProt:	P03191
Species:

Domain
In chain context
In PDB context

Structure of domain e2z0lB2

Domains in the same chain:

Download Pymol

e2z0lB1	B:1-153	DNA clamp	DNA clamp	DNA clamp
e2z0lB2	B:154-299	DNA clamp	DNA clamp	DNA clamp

Domains in the same PDB:

e2z0lA1	A:1-153	DNA clamp	DNA clamp	DNA clamp
e2z0lA2	A:154-299	DNA clamp	DNA clamp	DNA clamp
e2z0lB1	B:1-153	DNA clamp	DNA clamp	DNA clamp
e2z0lB2	B:154-299	DNA clamp	DNA clamp	DNA clamp
e2z0lC1	C:1-153	DNA clamp	DNA clamp	DNA clamp
e2z0lC2	C:154-299	DNA clamp	DNA clamp	DNA clamp
e2z0lD1	D:1-153	DNA clamp	DNA clamp	DNA clamp
e2z0lD2	D:154-299	DNA clamp	DNA clamp	DNA clamp
e2z0lE1	E:1-153	DNA clamp	DNA clamp	DNA clamp
e2z0lE2	E:154-299	DNA clamp	DNA clamp	DNA clamp
e2z0lF1	F:1-153	DNA clamp	DNA clamp	DNA clamp
e2z0lF2	F:154-299	DNA clamp	DNA clamp	DNA clamp
e2z0lG1	G:1-153	DNA clamp	DNA clamp	DNA clamp
e2z0lG2	G:154-299	DNA clamp	DNA clamp	DNA clamp
e2z0lH1	H:1-153	DNA clamp	DNA clamp	DNA clamp
e2z0lH2	H:154-299	DNA clamp	DNA clamp	DNA clamp

Structural contacts of domain e2z0lB2 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2z0lG2	B:X,Y,Z->G:x,y,z	DNA clamp	Interaction Interface Pymol
e2z0lH1	B:X-1/2,Y+1/2,Z->H:x,y,z	DNA clamp	Interaction Interface Pymol
e2z0lH2	B:X-1/2,Y+1/2,Z->H:x,y,z	DNA clamp	Interaction Interface Pymol
e2z0lG2	B:-X+2,Y,-Z+1/2->G:x,y,z	DNA clamp	Interaction Interface Pymol
e2z0lC2	B:X,Y,Z->C:x,y,z	DNA clamp	Interaction Interface Pymol