ECOD: domain e2zyzD1

Domain ID e2zyzD1

A: a+b two layers
X: Homing endonucleases-like
H: tRNA-intron endonuclease N-terminal domain-like
T: tRNA-intron endonuclease N-terminal domain-like
F: tRNA_int_endo_N

UID:	000366479
Type:	Automatic domain
Parent:	e1a79A1
Range:	D:1-83
PDB:	2zyz
PDB Description:	tRNA-splicing endonuclease
UniProt:	Q8ZVI1
Species:	Pyrobaculum aerophilum

Domains in the same chain:

Download Pymol

e2zyzD1	D:1-83	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e2zyzD2	D:84-183	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like

Domains in the same PDB:

e2zyzA1	A:1-93	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e2zyzB1	B:1-83	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e2zyzB2	B:84-183	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e2zyzC2	C:1-96	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e2zyzD1	D:1-83	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e2zyzD2	D:84-183	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like

Structural contacts of domain e2zyzD1 of H-group "tRNA-intron endonuclease N-terminal domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2zyzC2	D:x,y,z->C:X,Y,Z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e2zyzA1	D:x,y,z->A:X,Y,Z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e2zyzB1	D:x,y,z->B:X-1/2,-Y-1/2,-Z	tRNA-intron endonuclease N-terminal domain-like	Interaction Interface Pymol
e2zyzC2	D:-X,Y-1/2,-Z-1/2->C:x,y,z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e2zyzB1	D:x,y,z->B:-X+1/2,-Y-1,Z-1/2	tRNA-intron endonuclease N-terminal domain-like	Interaction Interface Pymol