Domain ID e3a9cC2

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: NagB/RpiA/CoA transferase-like
  • F: IF-2B
UID: 001189922
Type: Automatic domain
Parent: e1t5oA1
Range: C:111-322
Ligands: PEG RUB
PDB: 3a9c
PDB Description: TRANSLATION INITIATION FACTOR EIF-2B, DELTA SUBUNIT
UniProt: Q5JFM9
Hsap BLAST neighbor: Q9UI10
Species: Thermococcus kodakarensis

Structure of domain e3a9cC2

Domains in the same chain:

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e3a9cC3 C:2-110 Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain
e3a9cC2 C:111-322 Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like

Domains in the same PDB:

e3a9cA3 A:3-110 Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain
e3a9cA2 A:111-322 Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like
e3a9cB3 B:-5-110 Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain
e3a9cB2 B:111-322 Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like
e3a9cC3 C:2-110 Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain
e3a9cC2 C:111-322 Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like
e3a9cD3 D:1-110 Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain
e3a9cD2 D:111-322 Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like
e3a9cE3 E:2-110 Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain
e3a9cE2 E:111-322 Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like
e3a9cF3 F:1-110 Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain Translation initiation factor eIF-2B delta subunit N-terminal helical domain
e3a9cF2 F:111-322 Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like

Structural contacts of domain e3a9cC2 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3a9cD2 C:X,Y,Z->D:x,y,z Rossmann-related Interaction Interface Pymol
e3a9cE2 C:X,Y,Z->E:x,y,z Rossmann-related Interaction Interface Pymol
e3a9cA2 C:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e3a9cF2 C:-X+1,Y-1/2,-Z+1/2->F:x,y,z Rossmann-related Interaction Interface Pymol
e3a9cF3 C:-X+1,Y-1/2,-Z+1/2->F:x,y,z Translation initiation factor eIF-2B delta subunit N-terminal helical domain Interaction Interface Pymol
e3a9cF2 C:X,Y,Z->F:x,y,z Rossmann-related Interaction Interface Pymol
e3a9cB3 C:-X+1,Y-1/2,-Z+1/2->B:x,y,z Translation initiation factor eIF-2B delta subunit N-terminal helical domain Interaction Interface Pymol
e3a9cB2 C:-X+1,Y-1/2,-Z+1/2->B:x,y,z Rossmann-related Interaction Interface Pymol
e3a9cD2 C:x,y,z->D:X-1/2,-Y+1/2,-Z+1 Rossmann-related Interaction Interface Pymol