Domain ID e3ad7A5

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Ubiquitin-like
  • F: Fer2_4
UID: 001823446
Type: Automatic domain
Parent: e3c8yA4
Range: A:1-127
Ligands: SO4
PDB: 3ad7
PDB Description: SUBUNIT ALPHA OF SARCOSINE OXIDASE
UniProt: Q50LF0
Species: Corynebacterium sp. U-96

Structure of domain e3ad7A5

Domains in the same chain:

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e3ad7A5 A:1-127 beta-Grasp Ubiquitin-related Ubiquitin-like
e3ad7A2 A:128-480 Rossmann-like Rossmann-related Nucleotide-binding domain
e3ad7A4 A:481-537 HTH bacterioferritin-associated ferredoxin bacterioferritin-associated ferredoxin
e3ad7A7 A:556-723 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e3ad7A6 A:724-863 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e3ad7A3 A:865-963 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain

Domains in the same PDB:

e3ad7A5 A:1-127 beta-Grasp Ubiquitin-related Ubiquitin-like
e3ad7A2 A:128-480 Rossmann-like Rossmann-related Nucleotide-binding domain
e3ad7A4 A:481-537 HTH bacterioferritin-associated ferredoxin bacterioferritin-associated ferredoxin
e3ad7A7 A:556-723 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e3ad7A6 A:724-863 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e3ad7A3 A:865-963 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e3ad7B1 B:1-241,B:331-404 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3ad7B2 B:242-332 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e3ad7C1 C:6-200 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e3ad7D1 D:1-91 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3ad7A5 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ad7B2 A:X,Y,Z->B:x,y,z FAD-linked reductases-C Interaction Interface Pymol
e3ad7C1 A:X,Y,Z->C:x,y,z Aminomethyltransferase folate-binding domain Interaction Interface Pymol
e3ad7A5 A:x,y,z->A:-X,-X+Y,-Z+1/3 Ubiquitin-related Interaction Interface Pymol
e3ad7A2 A:x,y,z->A:-X,-X+Y,-Z+1/3 Rossmann-related Interaction Interface Pymol
e3ad7A2 A:-X,-X+Y,-Z+1/3->A:x,y,z Rossmann-related Interaction Interface Pymol
e3ad7A5 A:-X,-X+Y,-Z+1/3->A:x,y,z Ubiquitin-related Interaction Interface Pymol
e3ad7C1 A:-X,-X+Y,-Z+1/3->C:x,y,z Aminomethyltransferase folate-binding domain Interaction Interface Pymol