Domain ID e3adaA5

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Ubiquitin-like
  • F: Fer2_4
UID: 001823461
Type: Automatic domain
Parent: e3c8yA4
Range: A:1-127
Ligands: SO4
PDB: 3ada
PDB Description: SARCOSINE OXIDASE ALPHA SUBUNIT
UniProt: Q50LF0
Species: Corynebacterium sp. U-96

Structure of domain e3adaA5

Domains in the same chain:

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e3adaA5 A:1-127 beta-Grasp Ubiquitin-related Ubiquitin-like
e3adaA6 A:128-480 Rossmann-like Rossmann-related Nucleotide-binding domain
e3adaA4 A:481-537 HTH bacterioferritin-associated ferredoxin bacterioferritin-associated ferredoxin
e3adaA8 A:556-723 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e3adaA7 A:724-863 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e3adaA3 A:865-963 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain

Domains in the same PDB:

e3adaA5 A:1-127 beta-Grasp Ubiquitin-related Ubiquitin-like
e3adaA6 A:128-480 Rossmann-like Rossmann-related Nucleotide-binding domain
e3adaA4 A:481-537 HTH bacterioferritin-associated ferredoxin bacterioferritin-associated ferredoxin
e3adaA8 A:556-723 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e3adaA7 A:724-863 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e3adaA3 A:865-963 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e3adaB2 B:6-241,B:331-402 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3adaB3 B:242-332 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e3adaC1 C:6-200 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e3adaD1 D:1-91 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3adaA5 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3adaB3 A:X,Y,Z->B:x,y,z FAD-linked reductases-C Interaction Interface Pymol
e3adaC1 A:X,Y,Z->C:x,y,z Aminomethyltransferase folate-binding domain Interaction Interface Pymol
e3adaC1 A:x,y,z->A:-X,-X+Y,-Z+1/3 Aminomethyltransferase folate-binding domain Interaction Interface Pymol
e3adaA5 A:x,y,z->A:-X,-X+Y,-Z+1/3 Ubiquitin-related Interaction Interface Pymol
e3adaA5 A:-X,-X+Y,-Z+1/3->A:x,y,z Ubiquitin-related Interaction Interface Pymol
e3adaA5 A:-X,-X+Y,-Z+1/3->A:x,y,z Ubiquitin-related Interaction Interface Pymol
e3adaC1 A:-X,-X+Y,-Z+1/3->C:x,y,z Aminomethyltransferase folate-binding domain Interaction Interface Pymol