Domain ID e3agjA5

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: Alanine racemase-C
  • F: GTP_EFTU_D2
UID: 001231260
Type: Automatic domain
Parent: e2c78A1
Range: A:228-322
PDB: 3agj
PDB Description:
Hsap BLAST neighbor: Q5VTE0
Species:

Structure of domain e3agjA5

Domains in the same chain:

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e3agjA3 A:4-229 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3agjA5 A:228-322 cradle loop barrel RIFT-related Alanine racemase-C
e3agjA2 A:323-435 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain

Domains in the same PDB:

e3agjA3 A:4-229 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3agjA5 A:228-322 cradle loop barrel RIFT-related Alanine racemase-C
e3agjA2 A:323-435 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e3agjB5 B:-1-125 SH3 Dom34/Pelota N-terminal domain-like Dom34/Pelota N-terminal domain-like
e3agjB6 B:126-252 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3agjB4 B:253-355 Bacillus chorismate mutase-like L30e-like L30e-like
e3agjC3 C:4-229 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3agjC5 C:228-322 cradle loop barrel RIFT-related Alanine racemase-C
e3agjC2 C:323-434 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e3agjD8 D:-1-125 SH3 Dom34/Pelota N-terminal domain-like Dom34/Pelota N-terminal domain-like
e3agjD9 D:126-252 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3agjD7 D:253-355 Bacillus chorismate mutase-like L30e-like L30e-like
e3agjE3 E:3-229 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3agjE4 E:228-322 cradle loop barrel RIFT-related Alanine racemase-C
e3agjE2 E:323-432 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e3agjF5 F:0-125 SH3 Dom34/Pelota N-terminal domain-like Dom34/Pelota N-terminal domain-like
e3agjF6 F:126-252 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3agjF4 F:253-354 Bacillus chorismate mutase-like L30e-like L30e-like
e3agjG3 G:3-229 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3agjG5 G:228-322 cradle loop barrel RIFT-related Alanine racemase-C
e3agjG2 G:323-434 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e3agjH5 H:-1-125 SH3 Dom34/Pelota N-terminal domain-like Dom34/Pelota N-terminal domain-like
e3agjH6 H:126-252 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3agjH4 H:253-354 Bacillus chorismate mutase-like L30e-like L30e-like

Structural contacts of domain e3agjA5 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3agjB6 A:X,Y,Z->B:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3agjF5 A:X,Y,Z->F:x,y,z Dom34/Pelota N-terminal domain-like Interaction Interface Pymol