Domain ID e3alqS2

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  • A: few secondary structure elements
  • X: EGF-like
  • H: EGF-related
  • T: TNF receptor-like
  • F: TNFR_c6
UID: 001572602
Type: Automatic domain
Parent: e1extA1
Range: S:15-69
Ligands: CO
PDB: 3alq
PDB Description: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 1B
UniProt: P20333
Hsap BLAST neighbor: P20333
Species: Homo sapiens

Structure of domain e3alqS2

Domains in the same chain:

e3alqS2 S:15-69 EGF-like EGF-related TNF receptor-like
e3alqS3 S:70-158 EGF-like EGF-related TNF receptor-like
e3alqS1 S:159-178 EGF-like EGF-related TNF receptor-like

Domains in the same PDB:

e3alqA1 A:9-157 jelly-roll TNF-like TNF-like
e3alqB1 B:9-157 jelly-roll TNF-like TNF-like
e3alqC1 C:9-157 jelly-roll TNF-like TNF-like
e3alqD1 D:9-157 jelly-roll TNF-like TNF-like
e3alqE1 E:9-157 jelly-roll TNF-like TNF-like
e3alqF1 F:9-157 jelly-roll TNF-like TNF-like
e3alqR2 R:17-69 EGF-like EGF-related TNF receptor-like
e3alqR3 R:70-158 EGF-like EGF-related TNF receptor-like
e3alqR1 R:159-178 EGF-like EGF-related TNF receptor-like
e3alqS2 S:15-69 EGF-like EGF-related TNF receptor-like
e3alqS3 S:70-158 EGF-like EGF-related TNF receptor-like
e3alqS1 S:159-178 EGF-like EGF-related TNF receptor-like
e3alqT1 T:17-69 EGF-like EGF-related TNF receptor-like
e3alqT3 T:70-158 EGF-like EGF-related TNF receptor-like
e3alqT2 T:159-178 EGF-like EGF-related TNF receptor-like
e3alqU1 U:18-69 EGF-like EGF-related TNF receptor-like
e3alqU2 U:70-158 EGF-like EGF-related TNF receptor-like
e3alqU3 U:159-178 EGF-like EGF-related TNF receptor-like
e3alqV1 V:18-69 EGF-like EGF-related TNF receptor-like
e3alqV2 V:70-158 EGF-like EGF-related TNF receptor-like
e3alqV3 V:159-178 EGF-like EGF-related TNF receptor-like
e3alqW2 W:17-69 EGF-like EGF-related TNF receptor-like
e3alqW3 W:70-158 EGF-like EGF-related TNF receptor-like
e3alqW1 W:159-178 EGF-like EGF-related TNF receptor-like

Structural contacts of domain e3alqS2 of H-group "EGF-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3alqB1 S:x,y,z->B:X,Y,Z TNF-like Interaction Interface Pymol
e3alqC1 S:x,y,z->C:X,Y,Z TNF-like Interaction Interface Pymol
e3alqT2 S:x,y,z->T:-X+1,Y-1/2,-Z-1/2 EGF-related Interaction Interface Pymol
e3alqV1 S:x,y,z->V:-X,Y-1/2,-Z-1/2 EGF-related Interaction Interface Pymol
e3alqW3 S:x,y,z->W:-X+1,Y-1/2,-Z-1/2 EGF-related Interaction Interface Pymol