Domain ID e3av4A1

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  • A: beta barrels
  • X: Replication foci-targeting sequence N-terminal domain
  • H: Replication foci-targeting sequence N-terminal domain
  • T: Replication foci-targeting sequence N-terminal domain
  • F: DNMT1-RFD
UID: 001806474
Type: Manual and representative domain
Range: A:357-507
Ligands: ZN
PDB: 3av4
PDB Description: DNA (cytosine-5)-methyltransferase 1
UniProt: P13864
Hsap BLAST neighbor: P26358
Species: Mus musculus

Structure of domain e3av4A1

Domains in the same chain:

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e3av4A1 A:357-507 Replication foci-targeting sequence N-terminal domain Replication foci-targeting sequence N-terminal domain Replication foci-targeting sequence N-terminal domain
e3av4A2 A:508-641 HTH Replication foci-targeting sequence C-terminal domain Replication foci-targeting sequence C-terminal domain
e3av4A6 A:653-710 CXXC domain-like CXXC domain CXXC domain
e3av4A4 A:714-904 SH3 SH3 SH3
e3av4A5 A:905-1108 SH3 SH3 SH3
e3av4A3 A:1138-1437,A:1515-1612 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e3av4A7 A:1438-1514 CXXC domain-like C-terminal Zn-binding domain in DNA (cytosine-5)-methyltransferase 1 C-terminal Zn-binding domain in DNA (cytosine-5)-methyltransferase 1

Domains in the same PDB:

e3av4A1 A:357-507 Replication foci-targeting sequence N-terminal domain Replication foci-targeting sequence N-terminal domain Replication foci-targeting sequence N-terminal domain
e3av4A2 A:508-641 HTH Replication foci-targeting sequence C-terminal domain Replication foci-targeting sequence C-terminal domain
e3av4A6 A:653-710 CXXC domain-like CXXC domain CXXC domain
e3av4A4 A:714-904 SH3 SH3 SH3
e3av4A5 A:905-1108 SH3 SH3 SH3
e3av4A3 A:1138-1437,A:1515-1612 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e3av4A7 A:1438-1514 CXXC domain-like C-terminal Zn-binding domain in DNA (cytosine-5)-methyltransferase 1 C-terminal Zn-binding domain in DNA (cytosine-5)-methyltransferase 1

Structural contacts of domain e3av4A1 of H-group "Replication foci-targeting sequence N-terminal domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3av4A3 A:x,y,z->A:-X+1,-Y,Z Rossmann-related Interaction Interface Pymol
e3av4A3 A:-X+1,-Y,Z->A:x,y,z Rossmann-related Interaction Interface Pymol
e3av4A3 A:x,y,z->A:X-1/2,-Y+1/2,-Z Rossmann-related Interaction Interface Pymol
e3av4A5 A:x,y,z->A:X-1/2,-Y+1/2,-Z SH3 Interaction Interface Pymol