Domain ID e3av5A3

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: S-adenosyl-L-methionine-dependent methyltransferases
  • F: DNA_methylase
UID: 001812186
Type: Automatic domain
Parent: e3av4A3
Range: A:1138-1437,A:1515-1599
Ligands: SAH
PDB: 3av5
PDB Description: DNA (cytosine-5)-methyltransferase 1
UniProt: P13864
Hsap BLAST neighbor: P26358
Species: Mus musculus

Structure of domain e3av5A3

Domains in the same chain:

e3av5A4 A:357-507 Replication foci-targeting sequence N-terminal domain Replication foci-targeting sequence N-terminal domain Replication foci-targeting sequence N-terminal domain
e3av5A2 A:508-641 HTH Replication foci-targeting sequence C-terminal domain Replication foci-targeting sequence C-terminal domain
e3av5A7 A:653-665,A:688-710 CXXC domain-like CXXC domain CXXC domain
e3av5A6 A:714-904 SH3 SH3 SH3
e3av5A5 A:905-1108 SH3 SH3 SH3
e3av5A3 A:1138-1437,A:1515-1599 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e3av5A8 A:1438-1514 CXXC domain-like C-terminal Zn-binding domain in DNA (cytosine-5)-methyltransferase 1 C-terminal Zn-binding domain in DNA (cytosine-5)-methyltransferase 1

Domains in the same PDB:

e3av5A4 A:357-507 Replication foci-targeting sequence N-terminal domain Replication foci-targeting sequence N-terminal domain Replication foci-targeting sequence N-terminal domain
e3av5A2 A:508-641 HTH Replication foci-targeting sequence C-terminal domain Replication foci-targeting sequence C-terminal domain
e3av5A7 A:653-665,A:688-710 CXXC domain-like CXXC domain CXXC domain
e3av5A6 A:714-904 SH3 SH3 SH3
e3av5A5 A:905-1108 SH3 SH3 SH3
e3av5A3 A:1138-1437,A:1515-1599 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e3av5A8 A:1438-1514 CXXC domain-like C-terminal Zn-binding domain in DNA (cytosine-5)-methyltransferase 1 C-terminal Zn-binding domain in DNA (cytosine-5)-methyltransferase 1

Structural contacts of domain e3av5A3 of H-group "Rossmann-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3av5A3 A:x,y,z->A:-X+1,-Y,Z Rossmann-related Interaction Interface Pymol
e3av5A2 A:x,y,z->A:-X+1,-Y,Z Replication foci-targeting sequence C-terminal domain Interaction Interface Pymol
e3av5A4 A:x,y,z->A:-X+1,-Y,Z Replication foci-targeting sequence N-terminal domain Interaction Interface Pymol
e3av5A4 A:-X+1,-Y,Z->A:x,y,z Replication foci-targeting sequence N-terminal domain Interaction Interface Pymol
e3av5A3 A:-X+1,-Y,Z->A:x,y,z Rossmann-related Interaction Interface Pymol
e3av5A2 A:-X+1,-Y,Z->A:x,y,z Replication foci-targeting sequence C-terminal domain Interaction Interface Pymol
e3av5A4 A:X-1/2,-Y+1/2,-Z->A:x,y,z Replication foci-targeting sequence N-terminal domain Interaction Interface Pymol
e3av5A6 A:x,y,z->A:-X+3/2,Y-1/2,-Z+1 SH3 Interaction Interface Pymol