Domain ID e3ayzB2

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  • A: a/b three-layered sandwiches
  • X: Flavodoxin-like
  • H: Class I glutamine amidotransferase-like
  • T: CheY-like
  • F: Oxidored_q6
UID: 000430774
Type: Automatic domain
Parent: e1ublS3
Range: B:11-191
Ligands: F4S SF3
PDB: 3ayz
PDB Description: MEMBRANE-BOUND HYDROGENASE SMALL SUBUNIT
UniProt: F2Z6J5
Species: Hydrogenovibrio marinus

Structure of domain e3ayzB2

Domains in the same chain:

e3ayzB2 B:11-191 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3ayzB1 B:192-283 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Domains in the same PDB:

e3ayzA3 A:2-54,A:556-596 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayzA4 A:55-98,A:503-555 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayzA2 A:97-335,A:406-502 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3ayzA1 A:336-406 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e3ayzB2 B:11-191 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3ayzB1 B:192-283 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e3ayzC3 C:2-54,C:556-596 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayzC4 C:55-98,C:503-555 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ayzC2 C:97-335,C:406-502 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3ayzC1 C:336-406 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e3ayzD2 D:11-191 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3ayzD1 D:192-277 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Structural contacts of domain e3ayzB2 of H-group "Class I glutamine amidotransferase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ayzA2 B:x,y,z->A:X,Y,Z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol
e3ayzA4 B:x,y,z->A:X,Y,Z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3ayzA3 B:x,y,z->A:X,Y,Z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3ayzA1 B:x,y,z->A:X,Y,Z all-beta domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3ayzC2 B:x,y,z->C:X,Y,Z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol
e3ayzC1 B:x,y,z->C:-X,Y-1/2,-Z+1 all-beta domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3ayzA2 B:x,y,z->A:-X,Y-1/2,-Z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol