Domain ID e3bccD1

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  • A: alpha arrays
  • X: Cytochrome c-like
  • H: Cytochrome c
  • T: Cytochrome c
  • F: Cytochrom_C1
UID: 000051701
Type: Automatic domain
Parent: e1ppjD1
Range: D:1-195
Ligands: HEM
PDB: 3bcc
PDB Description: UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
UniProt: P00125
Hsap BLAST neighbor: P08574
Species: Gallus gallus

Structure of domain e3bccD1

Domains in the same chain:

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e3bccD1 D:1-195 Cytochrome c-like Cytochrome c Cytochrome c
e3bccD2 D:196-241 cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor

Domains in the same PDB:

e3bccA1 A:4-232 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e3bccA2 A:234-442 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e3bccB1 B:18-235 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e3bccB2 B:236-439 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e3bccC2 C:16-261 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e3bccC1 C:262-380 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3bccD1 D:1-195 Cytochrome c-like Cytochrome c Cytochrome c
e3bccD2 D:196-241 cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor
e3bccE2 E:1-69 iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor
e3bccE3 E:70-196 ISP domain ISP domain ISP domain
e3bccF1 F:12-109 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3bccG1 G:2-75 Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3bccH1 H:13-78 cytochrome bc1 complex 11 kDa protein-like Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e3bccJ1 J:4-62 Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

Structural contacts of domain e3bccD1 of H-group "Cytochrome c":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3bccC2 D:x,y,z->C:X,Y,Z Transmembrane heme-binding four-helical bundle Interaction Interface Pymol
e3bccH1 D:X,Y,Z->H:x,y,z Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Interaction Interface Pymol
e3bccJ1 D:X,Y,Z->J:x,y,z Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Interaction Interface Pymol
e3bccE2 D:X,Y,Z->E:x,y,z iron-sulfur subunit (ISP) transmembrane anchor Interaction Interface Pymol
e3bccE2 D:X,Y,Z->E:x,y,z iron-sulfur subunit (ISP) transmembrane anchor Interaction Interface Pymol
e3bccG1 D:X,Y,Z->G:x,y,z Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Interaction Interface Pymol
e3bccF1 D:-X,Y-1/2,-Z+1/2->F:x,y,z 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Interaction Interface Pymol