Domain ID e3bg5B1

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  • A: alpha arrays
  • X: RuvA-C
  • H: post-HMGL domain-like
  • T: post-HMGL domain-like
  • F: PYC_OADA
UID: 001635781
Type: Automatic domain
Parent: e4qslH2
Range: B:863-984
Ligands: PYR
PDB: 3bg5
PDB Description: Pyruvate carboxylase
UniProt: Q99UY8
Hsap BLAST neighbor: P11498
Species: Staphylococcus aureus

Structure of domain e3bg5B1

Domains in the same chain:

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e3bg5B5 B:36-150 Rossmann-like Rossmann-related PreATP-grasp domain
e3bg5B2 B:151-168,B:239-368 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e3bg5B7 B:369-489 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e3bg5B3 B:490-521,B:1030-1096 Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related a+b domain in pyruvate carboxylase
e3bg5B6 B:522-862 TIM beta/alpha-barrel TIM barrels TIM barrels
e3bg5B1 B:863-984 RuvA-C post-HMGL domain-like post-HMGL domain-like
e3bg5B4 B:985-1029 RuvA-C post-HMGL domain-like post-HMGL domain-like
e3bg5B8 B:1097-1178 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif

Domains in the same PDB:

e3bg5A4 A:36-150 Rossmann-like Rossmann-related PreATP-grasp domain
e3bg5A6 A:151-369 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e3bg5A1 A:370-490 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e3bg5A5 A:491-518,A:1030-1100 Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related a+b domain in pyruvate carboxylase
e3bg5A8 A:519-862 TIM beta/alpha-barrel TIM barrels TIM barrels
e3bg5A7 A:863-984 RuvA-C post-HMGL domain-like post-HMGL domain-like
e3bg5A2 A:985-1029 RuvA-C post-HMGL domain-like post-HMGL domain-like
e3bg5A3 A:1101-1178 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3bg5B5 B:36-150 Rossmann-like Rossmann-related PreATP-grasp domain
e3bg5B2 B:151-168,B:239-368 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e3bg5B7 B:369-489 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e3bg5B3 B:490-521,B:1030-1096 Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related a+b domain in pyruvate carboxylase
e3bg5B6 B:522-862 TIM beta/alpha-barrel TIM barrels TIM barrels
e3bg5B1 B:863-984 RuvA-C post-HMGL domain-like post-HMGL domain-like
e3bg5B4 B:985-1029 RuvA-C post-HMGL domain-like post-HMGL domain-like
e3bg5B8 B:1097-1178 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3bg5C16 C:36-150 Rossmann-like Rossmann-related PreATP-grasp domain
e3bg5C13 C:151-369 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e3bg5C14 C:370-490 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e3bg5C17 C:491-518,C:1026-1093,C:1140-1147 Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related a+b domain in pyruvate carboxylase
e3bg5C12 C:519-862 TIM beta/alpha-barrel TIM barrels TIM barrels
e3bg5C15 C:863-1025 RuvA-C post-HMGL domain-like post-HMGL domain-like
e3bg5D5 D:36-150 Rossmann-like Rossmann-related PreATP-grasp domain
e3bg5D2 D:151-168,D:239-368 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp
e3bg5D7 D:369-489 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e3bg5D3 D:490-521,D:1030-1094 Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related a+b domain in pyruvate carboxylase
e3bg5D1 D:522-862 TIM beta/alpha-barrel TIM barrels TIM barrels
e3bg5D6 D:863-984 RuvA-C post-HMGL domain-like post-HMGL domain-like
e3bg5D4 D:985-1029 RuvA-C post-HMGL domain-like post-HMGL domain-like
e3bg5D8 D:1101-1178 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif

Structural contacts of domain e3bg5B1 of H-group "post-HMGL domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3bg5C12 B:X,Y,Z->C:x,y,z TIM barrels Interaction Interface Pymol
e3bg5A3 B:x,y,z->A:X,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3bg5C15 B:X-1,Y,Z->C:x,y,z post-HMGL domain-like Interaction Interface Pymol