Domain ID e3c6lG2

Download files:
  • A: a+b two layers
  • X: MHC antigen-recognition domain
  • H: MHC antigen-recognition domain
  • T: MHC antigen-recognition domain
  • F: MHC_II_alpha
UID: 000075434
Type: Automatic domain
Parent: e1hdmA2
Range: G:1-82
Ligands: CA
PDB: 3c6l
PDB Description: H-2 class II histocompatibility antigen, A-B alpha chain
UniProt: P14434
Hsap BLAST neighbor: P01909
Species: Mus musculus

Structure of domain e3c6lG2

Domains in the same chain:

e3c6lG2 G:1-82 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e3c6lG1 G:83-181 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e3c6lA1 A:7-109 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3c6lA2 A:118-188 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3c6lB1 B:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3c6lB2 B:114-236 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3c6lC2 C:1-82 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e3c6lC1 C:83-181 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3c6lD2 D:1-121 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e3c6lD1 D:122-217 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3c6lE1 E:7-109 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3c6lE2 E:118-187 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3c6lF1 F:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3c6lF2 F:114-236 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3c6lG2 G:1-82 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e3c6lG1 G:83-181 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3c6lH2 H:1-121 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e3c6lH1 H:122-217 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e3c6lG2 of H-group "MHC antigen-recognition domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3c6lH1 G:X,Y,Z->H:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3c6lH1 G:X,Y,Z->H:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3c6lF1 G:x,y,z->F:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3c6lD1 G:X,Y,Z->D:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3c6lD1 G:x,y,z->H:X-1,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3c6lE1 G:-X,Y-1/2,-Z+1/2->E:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3c6lE1 G:x,y,z->E:X,Y,Z Immunoglobulin-related Interaction Interface Pymol