Domain ID e3c6mB1

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  • A: a+b two layers
  • X: TBP-like
  • H: S-adenosylmethionine decarboxylase-related
  • T: Bacterial S-adenosylmethionine decarboxylase
  • F: SpmSyn_N
UID: 001141890
Type: Manual domain
Parent: e3c6mA1
Range: B:4-118
PDB: 3c6m
PDB Description: SPERMINE SYNTHASE
In assembly with: e3c6mA1
UniProt: P52788
Hsap BLAST neighbor: P52788
Species: Homo sapiens

Structure of domain e3c6mB1 in assembly with e3c6mA1

Domains in the same chain:

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e3c6mB1 B:4-118 TBP-like S-adenosylmethionine decarboxylase-related Bacterial S-adenosylmethionine decarboxylase
e3c6mB3 B:120-173 Spermidine synthase tetramerisation domain Spermidine synthase tetramerisation domain Spermidine synthase tetramerisation domain
e3c6mB4 B:174-365 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases

Domains in the same PDB:

e3c6mA1 A:4-118 TBP-like S-adenosylmethionine decarboxylase-related Bacterial S-adenosylmethionine decarboxylase
e3c6mA3 A:119-173 Spermidine synthase tetramerisation domain Spermidine synthase tetramerisation domain Spermidine synthase tetramerisation domain
e3c6mA2 A:174-364 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e3c6mB1 B:4-118 TBP-like S-adenosylmethionine decarboxylase-related Bacterial S-adenosylmethionine decarboxylase
e3c6mB3 B:120-173 Spermidine synthase tetramerisation domain Spermidine synthase tetramerisation domain Spermidine synthase tetramerisation domain
e3c6mB4 B:174-365 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e3c6mC2 C:119-173 Spermidine synthase tetramerisation domain Spermidine synthase tetramerisation domain Spermidine synthase tetramerisation domain
e3c6mC1 C:174-366 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e3c6mD1 D:4-13,D:61-75,D:107-173 Spermidine synthase tetramerisation domain Spermidine synthase tetramerisation domain Spermidine synthase tetramerisation domain
e3c6mD2 D:174-364 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases

Structural contacts of domain e3c6mB1 of H-group "S-adenosylmethionine decarboxylase-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3c6mA1 B:x,y,z->A:X,Y,Z S-adenosylmethionine decarboxylase-related Interaction Interface Pymol
e3c6mA1 B:x,y,z->A:X,Y,Z S-adenosylmethionine decarboxylase-related Interaction Interface Pymol
e3c6mD2 B:x,y,z->D:-Y,X-Y-1,Z-1/3 Rossmann-related Interaction Interface Pymol