Domain ID e3cesB4

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: FAD/NAD(P)-binding domain
  • F: GIDA
UID: 001270225
Type: Automatic domain
Parent: e3cesA1
Range: B:0-198,B:344-458
PDB: 3ces
PDB Description: tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
UniProt: P0A6U3
Hsap BLAST neighbor: Q9Y2Z2
Species: Escherichia coli

Structure of domain e3cesB4

Domains in the same chain:

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e3cesB4 B:0-198,B:344-458 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3cesB5 B:199-259,B:279-343 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e3cesB2 B:459-550 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA

Domains in the same PDB:

e3cesA1 A:1-198,A:344-458 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3cesA2 A:199-343 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e3cesA3 A:459-550 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA
e3cesB4 B:0-198,B:344-458 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3cesB5 B:199-259,B:279-343 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e3cesB2 B:459-550 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA
e3cesC1 C:1-185,C:316-430 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3cesC2 C:186-315 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e3cesC3 C:431-550 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA
e3cesD4 D:0-198,D:344-458 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e3cesD5 D:199-259,D:279-343 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e3cesD3 D:459-550 C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA

Structural contacts of domain e3cesB4 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3cesA2 B:x,y,z->A:X,Y,Z FAD-linked reductases-C Interaction Interface Pymol
e3cesA1 B:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e3cesA1 B:-X+1,Y-1/2,-Z+1->A:x,y,z Rossmann-related Interaction Interface Pymol
e3cesA3 B:-X+1,Y-1/2,-Z+1->A:x,y,z C-terminal helical domain in tRNA modifying enzyme GidA Interaction Interface Pymol
e3cesA3 B:-X,Y-1/2,-Z+1->A:x,y,z C-terminal helical domain in tRNA modifying enzyme GidA Interaction Interface Pymol