ECOD: domain e3cfoA6

Domain ID e3cfoA6

A: alpha bundles
X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
F: Unmapped domains

UID:	001256526
Type:	Automatic domain
Parent:	e1ih7A1
Range:	A:469-574
PDB:	3cfo
PDB Description:	DNA polymerase
UniProt:	Q38087
Species:

Domain
In chain context
In PDB context

Structure of domain e3cfoA6

Domains in the same chain:

Download Pymol

e3cfoA4	A:1-375	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3cfoA7	A:376-468,A:575-732	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3cfoA6	A:469-574	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3cfoA5	A:733-906	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e3cfoA4	A:1-375	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3cfoA7	A:376-468,A:575-732	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3cfoA6	A:469-574	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3cfoA5	A:733-906	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e3cfoA6 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3cfoA4	A:-X,Y-1/2,-Z+1/2->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol