Domain ID e3cmmB1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Ubiquitin-like
  • F: ubiquitin
UID: 000072097
Type: Automatic domain
Parent: e1ogwA1
Range: B:1-76
PDB: 3cmm
PDB Description: Ubiquitin
UniProt: P0CG63
Hsap BLAST neighbor: P62987
Species:

Structure of domain e3cmmB1

Domains in the same chain:

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e3cmmB1 B:1-76 beta-Grasp Ubiquitin-related Ubiquitin-like

Domains in the same PDB:

e3cmmA1 A:12-174,A:261-284,A:357-405 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3cmmA4 A:175-260 cradle loop barrel RIFT-related Alanine racemase-C
e3cmmA5 A:285-356 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3cmmA2 A:406-593,A:863-913 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3cmmA6 A:594-862 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3cmmA3 A:914-1024 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3cmmB1 B:1-76 beta-Grasp Ubiquitin-related Ubiquitin-like
e3cmmC5 C:11-174,C:261-284,C:357-405 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3cmmC2 C:175-260 cradle loop barrel RIFT-related Alanine racemase-C
e3cmmC6 C:285-356 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3cmmC3 C:406-593,C:863-913 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3cmmC4 C:594-862 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3cmmC1 C:914-1024 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3cmmD1 D:1-76 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e3cmmB1 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3cmmA4 B:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e3cmmA2 B:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e3cmmA1 B:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e3cmmA1 B:x,y,z->A:-X,Y-1/2,-Z-1/2 Rossmann-related Interaction Interface Pymol
e3cmmA2 B:x,y,z->A:-X,Y-1/2,-Z-1/2 Rossmann-related Interaction Interface Pymol
e3cmmA6 B:x,y,z->A:-X,Y-1/2,-Z-1/2 Catalytic cysteine domain in ubiquitin-activating enzyme Interaction Interface Pymol