ECOD: domain e3cupB1

Domain ID e3cupB1

A: beta sandwiches
X: Immunoglobulin-like beta-sandwich
H: Immunoglobulin-related
T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
F: C1-set

UID:	001307595
Type:	Automatic domain
Parent:	e1k5nB1
Range:	B:106-188
Ligands:	EPE
PDB:	3cup
PDB Description:	MHC class II H2-IA-beta chain linked to GAD221-235 peptide
UniProt:	Q31135
Hsap BLAST neighbor:	P01920
Species:	Mus musculus

Domains in the same chain:

Download Pymol

e3cupB1	B:106-188	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3cupB2	B:245-334	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain

Domains in the same PDB:

e3cupA2	A:1A-81	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain
e3cupA1	A:82-181	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3cupB1	B:106-188	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3cupB2	B:245-334	MHC antigen-recognition domain	MHC antigen-recognition domain	MHC antigen-recognition domain

Structural contacts of domain e3cupB1 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3cupA2	B:x,y,z->A:X,Y,Z	MHC antigen-recognition domain	Interaction Interface Pymol
e3cupA1	B:x,y,z->A:X,Y,Z	Immunoglobulin-related	Interaction Interface Pymol
e3cupA1	B:-Y,-X+1,-Z+1/2->B:x,y,z	Immunoglobulin-related	Interaction Interface Pymol