ECOD: domain e3d3qA1

Domain ID e3d3qA1

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: IPPT

UID:	001508977
Type:	Automatic domain
Parent:	e3exaA1
Range:	A:6-116,A:193-315
PDB:	3d3q
PDB Description:	tRNA delta(2)-isopentenylpyrophosphate transferase
UniProt:	Q8CQL3
Hsap BLAST neighbor:	Q9H3H1
Species:

Domains in the same chain:

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e3d3qA1	A:6-116,A:193-315	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3d3qA2	A:117-192	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain

Domains in the same PDB:

e3d3qA1	A:6-116,A:193-315	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3d3qA2	A:117-192	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain
e3d3qB1	B:6-116,B:193-314	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3d3qB2	B:117-192	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain

Structural contacts of domain e3d3qA1 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3d3qB1	A:X,Y,Z->B:x,y,z	P-loop domains-related	Interaction Interface Pymol
e3d3qB2	A:x,y,z->B:-X,Y-1/2,-Z+1	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	Interaction Interface Pymol
e3d3qA1	A:x,y,z->A:-X,Y-1/2,-Z+1	P-loop domains-related	Interaction Interface Pymol
e3d3qA1	A:-X,Y-1/2,-Z+1->A:x,y,z	P-loop domains-related	Interaction Interface Pymol
e3d3qA2	A:-X,Y-1/2,-Z+1->A:x,y,z	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	Interaction Interface Pymol
e3d3qB1	A:x,y,z->B:-X+1,Y-1/2,-Z+1	P-loop domains-related	Interaction Interface Pymol
e3d3qA1	A:x,y,z->A:-X+1,Y-1/2,-Z+1	P-loop domains-related	Interaction Interface Pymol
e3d3qA1	A:-X+1,Y-1/2,-Z+1->A:x,y,z	P-loop domains-related	Interaction Interface Pymol