ECOD: domain e3degD1

Domain ID e3degD1

A: beta barrels
X: OB-fold
H: Nucleic acid-binding proteins
T: Nucleic acid-binding proteins
F: Ribosom_S12_S23

UID:	000023974
Type:	Automatic domain
Parent:	e2uubL1
Range:	D:1-118
PDB:	3deg
PDB Description:	30S ribosomal protein S12
UniProt:	P0A7S3
Hsap BLAST neighbor:	O15235
Species:

Domain
In chain context
In PDB context

Structure of domain e3degD1

Domains in the same chain:

Download Pymol

e3degD1	D:1-118	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Domains in the same PDB:

e3degC1	C:1-180	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3degC3	C:181-286	cradle loop barrel	RIFT-related	Alanine racemase-C
e3degC2	C:287-367	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e3degC4	C:368-478	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e3degC5	C:479-545	GTP-binding protein lepA C-terminal domain-like	GTP-binding protein lepA C-terminal domain	GTP-binding protein lepA C-terminal domain
e3degD1	D:1-118	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3degH3	H:1-73	Ribosomal protein L11/L12e N-terminal domain-like	Ribosomal protein L11/L12e N-terminal domain	Ribosomal protein L11/L12e N-terminal domain
e3degH4	H:74-141	HTH	HTH	Ribosomal protein L11, C-terminal domain

Structural contacts of domain e3degD1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3degC2	D:X,Y,Z->C:x,y,z	EF-G C-terminal domain-like	Interaction Interface Pymol
e3degC2	D:X,Y,Z->C:x,y,z	EF-G C-terminal domain-like	Interaction Interface Pymol