Domain ID e3df2E1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 000109949
Type: Automatic domain
Parent: e1dmgA1
Range: E:1-198
Ligands: MG
PDB: 3df2
PDB Description:
Hsap BLAST neighbor: Q9BYD3
Species:

Structure of domain e3df2E1

Domains in the same chain:

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e3df2E1 E:1-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e3df201 0:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3df221 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3df231 3:1-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3df241 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3df2C3 C:1-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3df2C4 C:125-271 SH3 SH3 SH3
e3df2E1 E:1-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3df2F1 F:1-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3df2G2 G:1-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3df2G1 G:82-170 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3df2H2 H:1-52 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3df2I3 I:1-73 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3df2I4 I:74-141 HTH HTH Ribosomal protein L11, C-terminal domain
e3df2J1 J:1-140 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3df2K1 K:2-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3df2N1 N:14-117 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3df2R1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3df2S1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3df2T1 T:6-93 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3df2U2 U:1-102 SH3 SH3 SH3
e3df2V1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3df2W1 W:19-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3df2X1 X:1-60 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3df2Y1 Y:1-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3df2Z1 Z:2-78 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28

Structural contacts of domain e3df2E1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 E:X,Y,Z->L:x,y,z Ribosomal protein L4 Interaction Interface Pymol