Domain ID e3df4Z1

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  • A: few secondary structure elements
  • X: Ribosomal protein bL28-related
  • H: Ribosomal protein bL28-related
  • T: Ribosomal protein L28
  • F: Ribosomal_L28
UID: 000089831
Type: Automatic domain
Parent: e1vw4S1
Range: Z:2-78
PDB: 3df4
PDB Description:
Species:

Structure of domain e3df4Z1

Domains in the same chain:

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e3df4Z1 Z:2-78 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28

Domains in the same PDB:

e3df401 0:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3df421 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3df431 3:1-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3df441 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3df4C3 C:1-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3df4C4 C:125-271 SH3 SH3 SH3
e3df4E1 E:1-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3df4F1 F:1-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3df4G2 G:1-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3df4G1 G:82-170 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3df4H2 H:1-52 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3df4I3 I:1-73 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3df4I4 I:74-141 HTH HTH Ribosomal protein L11, C-terminal domain
e3df4J1 J:1-140 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3df4K1 K:2-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3df4N1 N:14-117 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3df4R1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3df4S1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3df4T1 T:6-93 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3df4U2 U:1-102 SH3 SH3 SH3
e3df4V1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3df4W1 W:19-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3df4X1 X:1-60 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3df4Y1 Y:1-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3df4Z1 Z:2-78 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28

Structural contacts of domain e3df4Z1 of H-group "Ribosomal protein bL28-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3df4H2 Z:x,y,z->H:X,Y,Z L9 N-domain-like Interaction Interface Pymol