ECOD: domain e3dfzB1

Domain ID e3dfzB1

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: NAD(P)-binding Rossmann-fold domains
F: NAD_binding_7

UID:	001608376
Type:	Automatic domain
Parent:	e1pjqA3
Range:	B:1-89
Ligands:	GOL
PDB:	3dfz
PDB Description:	Precorrin-2 dehydrogenase
UniProt:	P61818
Species:	Bacillus megaterium

Domains in the same chain:

Download Pymol

e3dfzB1	B:1-89	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e3dfzB2	B:91-167	SSH domain in siroheme synthase middle domains-like	SSH domain in siroheme synthase middle domains-like	SSH domain in siroheme synthase middle domains-like
e3dfzB3	B:168-201	alpha-helical domain in siroheme synthase middle domains-like	alpha-helical domain in siroheme synthase middle domains-like	alpha-helical domain in siroheme synthase middle domains-like

Domains in the same PDB:

e3dfzA1	A:1-110	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e3dfzA2	A:111-170	SSH domain in siroheme synthase middle domains-like	SSH domain in siroheme synthase middle domains-like	SSH domain in siroheme synthase middle domains-like
e3dfzA3	A:171-201	alpha-helical domain in siroheme synthase middle domains-like	alpha-helical domain in siroheme synthase middle domains-like	alpha-helical domain in siroheme synthase middle domains-like
e3dfzB1	B:1-89	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e3dfzB2	B:91-167	SSH domain in siroheme synthase middle domains-like	SSH domain in siroheme synthase middle domains-like	SSH domain in siroheme synthase middle domains-like
e3dfzB3	B:168-201	alpha-helical domain in siroheme synthase middle domains-like	alpha-helical domain in siroheme synthase middle domains-like	alpha-helical domain in siroheme synthase middle domains-like

Structural contacts of domain e3dfzB1 of H-group "Rossmann-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3dfzA1	B:x,y,z->A:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e3dfzA2	B:x,y,z->A:X,Y,Z	SSH domain in siroheme synthase middle domains-like	Interaction Interface Pymol
e3dfzB1	B:x,y,z->B:X-Y+1/3,-Y+2/3,-Z+2/3	Rossmann-related	Interaction Interface Pymol
e3dfzB1	B:X-Y+1/3,-Y+2/3,-Z+2/3->B:x,y,z	Rossmann-related	Interaction Interface Pymol
e3dfzB2	B:x,y,z->B:Y,X,-Z+1	SSH domain in siroheme synthase middle domains-like	Interaction Interface Pymol
e3dfzB1	B:x,y,z->B:Y,X,-Z+1	Rossmann-related	Interaction Interface Pymol
e3dfzB1	B:Y,X,-Z+1->B:x,y,z	Rossmann-related	Interaction Interface Pymol
e3dfzB2	B:Y,X,-Z+1->B:x,y,z	SSH domain in siroheme synthase middle domains-like	Interaction Interface Pymol