| UID: | 000370428 |
|---|---|
| Type: | Automatic domain |
| Parent: | e3bbbA1 |
| Range: | B:1-133 |
| Ligands: | GDP MG |
| PDB: | 3dkd |
| PDB Description: | Nucleoside diphosphate kinase |
| UniProt: | Q5UQL3 |
| Hsap BLAST neighbor: | Q13232 |
| Species: | Acanthamoeba polyphaga mimivirus |
Structure of domain e3dkdB1
Domains in the same chain:
| e3dkdB1 | B:1-133 | Alpha-beta plaits | Nucleoside diphosphate kinases | Nucleoside diphosphate kinases |
Domains in the same PDB:
| e3dkdA1 | A:1-133 | Alpha-beta plaits | Nucleoside diphosphate kinases | Nucleoside diphosphate kinases |
| e3dkdB1 | B:1-133 | Alpha-beta plaits | Nucleoside diphosphate kinases | Nucleoside diphosphate kinases |
Structural contacts of domain e3dkdB1 of H-group "Nucleoside diphosphate kinases":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3dkdA1 | B:x,y,z->A:X,Y,Z | Nucleoside diphosphate kinases | Interaction Interface Pymol |
| e3dkdB1 | B:x,y,z->B:-Y+1,X-Y+1,Z | Nucleoside diphosphate kinases | Interaction Interface Pymol |
| e3dkdB1 | B:-Y+1,X-Y+1,Z->B:x,y,z | Nucleoside diphosphate kinases | Interaction Interface Pymol |
| e3dkdA1 | B:x,y,z->A:X-Y+1,X+1,Z+1/2 | Nucleoside diphosphate kinases | Interaction Interface Pymol |
| e3dkdA1 | B:-X+1,-Y+2,Z-1/2->A:x,y,z | Nucleoside diphosphate kinases | Interaction Interface Pymol |
| e3dkdB1 | B:x,y,z->B:-Y+2,X-Y+2,Z | Nucleoside diphosphate kinases | Interaction Interface Pymol |
| e3dkdB1 | B:-Y+2,X-Y+2,Z->B:x,y,z | Nucleoside diphosphate kinases | Interaction Interface Pymol |
