Domain ID e3dm2B3

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RVT_thumb
UID: 001307652
Type: Automatic domain
Parent: e2zd1B1
Range: B:243-316
PDB: 3dm2
PDB Description: p51 RT
UniProt: Q74596
Species:

Structure of domain e3dm2B3

Domains in the same chain:

e3dm2B1 B:7-212,B:233-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3dm2B3 B:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3dm2B2 B:317-437 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Domains in the same PDB:

e3dm2A7 A:1-240 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3dm2A6 A:241-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3dm2A5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e3dm2A8 A:429-539 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3dm2B1 B:7-212,B:233-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3dm2B3 B:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3dm2B2 B:317-437 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e3dm2B3 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dm2A8 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e3dm2A5 B:x,y,z->A:-X+1/2,-Y,Z-1/2 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e3dm2A8 B:x,y,z->A:-X+1/2,-Y,Z-1/2 Ribonuclease H-like Interaction Interface Pymol
e3dm2A6 B:x,y,z->A:-X+1/2,-Y,Z-1/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3dm2A7 B:X-1/2,-Y-1/2,-Z+1->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol