Domain ID e3dmjA7

Download files:
  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: RVT_1
UID: 001187014
Type: Automatic domain
Parent: e1ztwA1
Range: A:1-240
Ligands: GWE
PDB: 3dmj
PDB Description: Reverse transcriptase/ribonuclease H
UniProt: A7YKL0
Hsap BLAST neighbor: P63135
Species:

Structure of domain e3dmjA7

Domains in the same chain:

e3dmjA7 A:1-240 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3dmjA6 A:241-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3dmjA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e3dmjA8 A:429-539 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e3dmjA7 A:1-240 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3dmjA6 A:241-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3dmjA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e3dmjA8 A:429-539 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3dmjB4 B:7-212,B:233-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3dmjB6 B:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3dmjB5 B:317-437 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e3dmjA7 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dmjB4 A:X,Y,Z->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3dmjA6 A:x,y,z->A:-X,Y-1/2,-Z+1/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3dmjA5 A:x,y,z->A:-X,Y-1/2,-Z+1/2 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e3dmjA8 A:x,y,z->A:-X,Y-1/2,-Z+1/2 Ribonuclease H-like Interaction Interface Pymol
e3dmjB4 A:-X+1/2,-Y-1,Z-1/2->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3dmjA5 A:X,Y,Z-1->A:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e3dmjA6 A:x,y,z->A:-X,Y-1/2,-Z+3/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3dmjB5 A:X,Y,Z-1->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e3dmjB4 A:X,Y,Z-1->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3dmjB5 A:x,y,z->B:X-1/2,-Y-1/2,-Z+1 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol