Domain ID e3dp8A3

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: SBP_bac_5
UID: 001520054
Type: Automatic domain
Parent: e1zlqA3
Range: A:246-470
Ligands: ACT CL GOL HCT SO4
PDB: 3dp8
PDB Description: NICKEL-BINDING PERIPLASMIC PROTEIN
UniProt: P33590
Species:

Structure of domain e3dp8A3

Domains in the same chain:

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e3dp8A2 A:2-19,A:141-245,A:471-499 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3dp8A1 A:20-140 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e3dp8A3 A:246-470 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Domains in the same PDB:

e3dp8A2 A:2-19,A:141-245,A:471-499 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3dp8A1 A:20-140 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e3dp8A3 A:246-470 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3dp8B3 B:3-19,B:141-245,B:471-500 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3dp8B1 B:20-140 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e3dp8B2 B:246-470 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3dp8C2 C:4-19,C:141-245,C:471-499 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3dp8C1 C:20-140 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e3dp8C3 C:246-470 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Structural contacts of domain e3dp8A3 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dp8B2 A:X,Y,Z->B:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3dp8B3 A:X,Y,Z->B:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3dp8A3 A:x,y,z->A:-X,-Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e3dp8A3 A:-X,-Y,Z->A:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3dp8B3 A:-Y,X-Y,Z-1/3->B:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3dp8B2 A:-Y,X-Y,Z-1/3->B:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3dp8A2 A:X-Y,X,Z+1/3->A:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3dp8B2 A:-X,-Y,Z->B:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol