| UID: | 000348988 |
|---|---|
| Type: | Automatic domain |
| Parent: | e2zeqA1 |
| Range: | B:100-176 |
| PDB: | 3dqv |
| PDB Description: | NEDD8 |
| UniProt: | Q15843 |
| Hsap BLAST neighbor: | Q15843 |
| Species: | Homo sapiens |
Structure of domain e3dqvB1
Domains in the same chain:
| e3dqvB1 | B:100-176 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
Domains in the same PDB:
| e3dqvA1 | A:99-176 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e3dqvB1 | B:100-176 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e3dqvC3 | C:1401-1493 | Repetitive alpha hairpins | ARM repeat | ARM repeat |
| e3dqvC5 | C:1494-1594 | a+b domain in cullin-like proteins | a+b domain in cullin-like proteins | a+b domain in cullin-like proteins |
| e3dqvC7 | C:1595-1693 | HTH | HTH | winged |
| e3dqvC6 | C:1694-1780 | HTH | HTH | winged |
| e3dqvD3 | D:1401-1493 | Repetitive alpha hairpins | ARM repeat | ARM repeat |
| e3dqvD5 | D:1494-1594 | a+b domain in cullin-like proteins | a+b domain in cullin-like proteins | a+b domain in cullin-like proteins |
| e3dqvD7 | D:1595-1693 | HTH | HTH | winged |
| e3dqvD6 | D:1694-1780 | HTH | HTH | winged |
| e3dqvR1 | R:20-105 | RING/U-box-like | RING/U-box-like | RING/U-box |
| e3dqvY1 | Y:19-105 | RING/U-box-like | RING/U-box-like | RING/U-box |
Structural contacts of domain e3dqvB1 of H-group "Ubiquitin-related":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3dqvD6 | B:X,Y,Z->D:x,y,z | HTH | Interaction Interface Pymol |
| e3dqvC6 | B:X-1/2,-Y-1/2,-Z-1->C:x,y,z | HTH | Interaction Interface Pymol |
| e3dqvC7 | B:x,y,z->C:-X,Y-1/2,-Z-1/2 | HTH | Interaction Interface Pymol |
| e3dqvR1 | B:x,y,z->R:X,Y-1,Z | RING/U-box-like | Interaction Interface Pymol |
