| UID: | 000004485 |
|---|---|
| Type: | Manual and representative domain |
| Range: | B:7-331 |
| Ligands: | CA ZN |
| PDB: | 3dss |
| PDB Description: | Geranylgeranyl transferase type-2 subunit beta |
| UniProt: | Q08603 |
| Hsap BLAST neighbor: | P53611 |
| Species: | Rattus norvegicus |
Structure of domain e3dssB1
Domains in the same chain:
| e3dssB1 | B:7-331 | Repetitive alpha hairpins | alpha/alpha toroid | alpha/alpha toroid |
Domains in the same PDB:
| e3dssA1 | A:12-330 | Repetitive alpha hairpins | ARM repeat | ARM repeat |
| e3dssB1 | B:7-331 | Repetitive alpha hairpins | alpha/alpha toroid | alpha/alpha toroid |
Structural contacts of domain e3dssB1 of H-group "alpha/alpha toroid":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3dssA1 | B:x,y,z->A:X,Y,Z | ARM repeat | Interaction Interface Pymol |
| e3dssA1 | B:-X,Y-1/2,-Z+1/2->A:x,y,z | ARM repeat | Interaction Interface Pymol |
| e3dssA1 | B:X-1/2,-Y+1/2,-Z->A:x,y,z | ARM repeat | Interaction Interface Pymol |
| e3dssB1 | B:x,y,z->B:-X,Y-1/2,-Z+1/2 | alpha/alpha toroid | Interaction Interface Pymol |
| e3dssB1 | B:-X,Y-1/2,-Z+1/2->B:x,y,z | alpha/alpha toroid | Interaction Interface Pymol |
| e3dssB1 | B:x,y,z->B:X-1/2,-Y+1/2,-Z | alpha/alpha toroid | Interaction Interface Pymol |
| e3dssB1 | B:X-1/2,-Y+1/2,-Z->B:x,y,z | alpha/alpha toroid | Interaction Interface Pymol |
| e3dssA1 | B:x,y,z->A:X-1/2,-Y+1/2,-Z | ARM repeat | Interaction Interface Pymol |
