Domain ID e3dufD4

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: Transket_pyr
UID: 001278222
Type: Automatic domain
Parent: e2r8oA2
Range: D:1-188
Ligands: K MG R1T
PDB: 3duf
PDB Description: PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA
UniProt: P21874
Hsap BLAST neighbor: P21953
Species:

Structure of domain e3dufD4

Domains in the same chain:

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e3dufD4 D:1-188 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dufD3 D:189-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like

Domains in the same PDB:

e3dufA1 A:4-368 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dufB4 B:1-188 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dufB3 B:189-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e3dufC1 C:4-368 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dufD4 D:1-188 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dufD3 D:189-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e3dufE1 E:4-368 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dufF4 F:1-188 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dufF3 F:189-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e3dufG1 G:4-368 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dufH4 H:1-188 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dufH3 H:189-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e3dufI1 I:128-165 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
e3dufJ1 J:130-165 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex

Structural contacts of domain e3dufD4 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dufB4 D:x,y,z->B:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e3dufB3 D:x,y,z->B:X,Y,Z TK C-terminal domain-like Interaction Interface Pymol
e3dufC1 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e3dufA1 D:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e3dufH4 D:-X,Y-1/2,-Z->H:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e3dufE1 D:-X,Y-1/2,-Z->E:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol