Domain ID e3dvaD4

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: Transket_pyr
UID: 001278218
Type: Automatic domain
Parent: e2r8oA2
Range: D:1-188
Ligands: K TPW
PDB: 3dva
PDB Description: Pyruvate dehydrogenase E1 component subunit beta
UniProt: P21874
Hsap BLAST neighbor: P21953
Species:

Structure of domain e3dvaD4

Domains in the same chain:

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e3dvaD4 D:1-188 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dvaD3 D:189-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like

Domains in the same PDB:

e3dvaA1 A:4-368 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dvaB4 B:1-188 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dvaB3 B:189-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e3dvaC1 C:4-368 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dvaD4 D:1-188 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dvaD3 D:189-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e3dvaE1 E:4-368 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dvaF2 F:1-190 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dvaF1 F:191-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e3dvaG1 G:4-368 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dvaH2 H:1-190 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e3dvaH1 H:191-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e3dvaI1 I:128-169 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
e3dvaJ1 J:128-167 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex

Structural contacts of domain e3dvaD4 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dvaB4 D:x,y,z->B:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e3dvaB3 D:x,y,z->B:X,Y,Z TK C-terminal domain-like Interaction Interface Pymol
e3dvaC1 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e3dvaA1 D:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e3dvaH2 D:-X,Y-1/2,-Z->H:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol