ECOD: domain e3dvnY1

Domain ID e3dvnY1

A: a+b two layers
X: beta-Grasp
H: Ubiquitin-related
T: Ubiquitin-like
F: ubiquitin

UID:	001037403
Type:	Automatic domain
Parent:	e1ogwA1
Range:	Y:1-76
PDB:	3dvn
PDB Description:	Ubiquitin
UniProt:	P0CG48
Hsap BLAST neighbor:	P62979
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3dvnY1

Domains in the same chain:

Download Pymol

e3dvnY1	Y:1-76	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Domains in the same PDB:

e3dvnA1	A:5-109	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dvnA2	A:110-214	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dvnB1	B:2-120	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dvnB2	B:121-221	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dvnH1	H:2-120	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dvnH2	H:121-221	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dvnL1	L:5-109	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dvnL2	L:110-214	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dvnU1	U:1-73	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e3dvnV1	V:1-76	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e3dvnX1	X:1-73	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e3dvnY1	Y:1-76	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Structural contacts of domain e3dvnY1 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3dvnB1	Y:x,y,z->B:X,Y,Z	Immunoglobulin-related	Interaction Interface Pymol
e3dvnH2	Y:-X-1/2,Y-1/2,-Z-1->H:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e3dvnY1	Y:x,y,z->Y:-X,Y,-Z-1	Ubiquitin-related	Interaction Interface Pymol
e3dvnY1	Y:-X,Y,-Z-1->Y:x,y,z	Ubiquitin-related	Interaction Interface Pymol
e3dvnX1	Y:x,y,z->X:X,Y,Z	Ubiquitin-related	Interaction Interface Pymol
e3dvnA1	Y:x,y,z->A:X,Y,Z	Immunoglobulin-related	Interaction Interface Pymol
e3dvnX1	Y:x,y,z->X:-X,Y,-Z-1	Ubiquitin-related	Interaction Interface Pymol