Domain ID e3dyaA5

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: RNaseH-like domain in reverse transcriptase
  • T: RNaseH-like domain in reverse transcriptase
  • F: RVT_connect
UID: 001186600
Type: Automatic domain
Parent: e2zd1B3
Range: A:317-428
Ligands: PZL
PDB: 3dya
PDB Description: REVERSE TRANSCRIPTASE/RIBONUCLEASE H
UniProt: P04585
Species:

Structure of domain e3dyaA5

Domains in the same chain:

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e3dyaA8 A:1-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3dyaA7 A:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3dyaA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e3dyaA6 A:429-555 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e3dyaA8 A:1-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3dyaA7 A:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3dyaA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e3dyaA6 A:429-555 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3dyaB2 B:5-237 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3dyaB1 B:238-311 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3dyaB3 B:312-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e3dyaA5 of H-group "RNaseH-like domain in reverse transcriptase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dyaB3 A:X,Y,Z->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e3dyaB2 A:X,Y,Z->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3dyaA7 A:x,y,z->A:-X+1,Y,-Z+1/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3dyaA7 A:-X+1,Y,-Z+1/2->A:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3dyaB2 A:X-1/2,-Y+1/2,-Z->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol