Domain ID e3dyoB5

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Glyco_hydro_2_C
UID: 000350911
Type: Automatic domain
Parent: e1jz8A5
Range: B:334-625
Ligands: DMS IPT MG NA
PDB: 3dyo
PDB Description: Beta-galactosidase
UniProt: P00722
Hsap BLAST neighbor: P08236
Species:

Structure of domain e3dyoB5

Domains in the same chain:

Download Pymol

e3dyoB1 B:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dyoB2 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dyoB5 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dyoB3 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dyoB4 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e3dyoA1 A:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dyoA2 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dyoA5 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dyoA3 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dyoA4 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3dyoB1 B:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dyoB2 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dyoB5 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dyoB3 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dyoB4 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3dyoC1 C:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dyoC2 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dyoC5 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dyoC3 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dyoC4 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3dyoD1 D:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dyoD2 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dyoD5 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dyoD3 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dyoD4 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e3dyoB5 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dyoC5 B:X,Y,Z->C:x,y,z TIM barrels Interaction Interface Pymol
e3dyoC2 B:X,Y,Z->C:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3dyoC1 B:X,Y,Z->C:x,y,z Galactose-binding domain-like Interaction Interface Pymol
e3dyoA5 B:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol
e3dyoC4 B:x,y,z->C:X-1/2,-Y+1/2,-Z supersandwich Interaction Interface Pymol
e3dyoC5 B:x,y,z->C:X-1/2,-Y+1/2,-Z TIM barrels Interaction Interface Pymol