Domain ID e3dypD5

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Glyco_hydro_2_C
UID: 000350941
Type: Automatic domain
Parent: e1jz8A5
Range: D:334-625
Ligands: DMS MG NA
PDB: 3dyp
PDB Description: Beta-galactosidase
UniProt: P00722
Hsap BLAST neighbor: P08236
Species:

Structure of domain e3dypD5

Domains in the same chain:

Download Pymol

e3dypD1 D:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dypD2 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dypD5 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dypD3 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dypD4 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e3dypA1 A:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dypA2 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dypA5 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dypA3 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dypA4 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3dypB1 B:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dypB2 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dypB5 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dypB3 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dypB4 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3dypC1 C:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dypC2 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dypC5 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dypC3 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dypC4 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3dypD1 D:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3dypD2 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dypD5 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3dypD3 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3dypD4 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e3dypD5 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dypA1 D:x,y,z->A:X,Y,Z Galactose-binding domain-like Interaction Interface Pymol
e3dypA2 D:x,y,z->A:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3dypA5 D:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol
e3dypC5 D:x,y,z->C:X,Y,Z TIM barrels Interaction Interface Pymol