Domain ID e3e3kA3

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: SBP_bac_5
UID: 001520122
Type: Automatic domain
Parent: e1zlqA4
Range: A:2-19,A:141-245,A:471-500
PDB: 3e3k
PDB Description: NICKEL-BINDING PERIPLASMIC PROTEIN
UniProt: P33590
Species:

Structure of domain e3e3kA3

Domains in the same chain:

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e3e3kA3 A:2-19,A:141-245,A:471-500 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3e3kA1 A:20-140 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e3e3kA2 A:246-470 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Domains in the same PDB:

e3e3kA3 A:2-19,A:141-245,A:471-500 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3e3kA1 A:20-140 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e3e3kA2 A:246-470 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3e3kB2 B:3-19,B:141-245,B:471-502 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3e3kB1 B:20-140 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e3e3kB3 B:246-470 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3e3kC3 C:2-19,C:141-245,C:471-499 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3e3kC1 C:20-140 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e3e3kC2 C:246-470 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Structural contacts of domain e3e3kA3 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3e3kB3 A:X,Y,Z->B:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3e3kB2 A:X,Y,Z->B:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3e3kB2 A:X-Y,X,Z+1/3->B:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3e3kA2 A:X-Y,X,Z+1/3->A:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3e3kC3 A:X-Y-1,X-1,Z+1/3->C:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3e3kC1 A:x,y,z->C:X-Y,X,Z-2/3 Oligo-peptide binding protein (OPPA) insertion domain Interaction Interface Pymol