Domain ID e3ecrA1

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: Porphobil_deam
UID: 001520142
Type: Automatic domain
Parent: e1pdaA3
Range: A:121-220
Ligands: DPM
PDB: 3ecr
PDB Description: Porphobilinogen deaminase
UniProt: P08397
Hsap BLAST neighbor: P08397
Species: Homo sapiens

Structure of domain e3ecrA1

Structural contacts of domain e3ecrA1 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ecrB2 A:X-1/2,-Y+1/2,-Z+1->B:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3ecrB1 A:X-1/2,-Y+1/2,-Z+1->B:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3ecrB1 A:X,Y,Z->B:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3ecrA4 A:-X+1/2,-Y+1,Z-1/2->A:x,y,z Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Interaction Interface Pymol
e3ecrB3 A:X-1,Y,Z->B:x,y,z Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Interaction Interface Pymol